Michael Stone
Faculty Member
Last active: 1/20/2015

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Publications

The following timeline graph is generated from all co-authored publications.

Featured publications are shown below:

  1. DNA Sequence Modulates Geometrical Isomerism of the trans-8,9- Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)- 9-hydroxy Aflatoxin B1 Adduct. Li L, Brown KL, Ma R, Stone MP (2015) Chem Res Toxicol 28(2): 225-37
    › Primary publication · 25587868 (PubMed) · PMC4332041 (PubMed Central)
  2. NMR analysis of base-pair opening kinetics in DNA. Szulik MW, Voehler M, Stone MP (2014) Curr Protoc Nucleic Acid Chem : 7.20.1-18
    › Primary publication · 25501592 (PubMed) · PMC4274747 (PubMed Central)
  3. Major groove orientation of the (2S)-N(6)-(2-hydroxy-3-buten-1-yl)-2'-deoxyadenosine DNA adduct induced by 1,2-epoxy-3-butene. Kowal EA, Wickramaratne S, Kotapati S, Turo M, Tretyakova N, Stone MP (2014) Chem Res Toxicol 27(10): 1675-86
    › Primary publication · 25238403 (PubMed) · PMC4203389 (PubMed Central)
  4. Error-prone replication bypass of the primary aflatoxin B1 DNA adduct, AFB1-N7-Gua. Lin YC, Li L, Makarova AV, Burgers PM, Stone MP, Lloyd RS (2014) J Biol Chem 289(26): 18497-506
    › Primary publication · 24838242 (PubMed) · PMC4140297 (PubMed Central)
  5. Structures of exocyclic R,R- and S,S-N(6),N(6)-(2,3-dihydroxybutan-1,4-diyl)-2'-deoxyadenosine adducts induced by 1,2,3,4-diepoxybutane. Kowal EA, Seneviratne U, Wickramaratne S, Doherty KE, Cao X, Tretyakova N, Stone MP (2014) Chem Res Toxicol 27(5): 805-17
    › Primary publication · 24741991 (PubMed) · PMC4027948 (PubMed Central)
  6. Looking for Waldo: a potential thermodynamic signature to DNA damage. Gold B, Stone MP, Marky LA (2014) Acc Chem Res 47(4): 1446-54
    › Primary publication · 24702131 (PubMed) · PMC3993888 (PubMed Central)
  7. Molecular basis of aflatoxin-induced mutagenesis-role of the aflatoxin B1-formamidopyrimidine adduct. Lin YC, Li L, Makarova AV, Burgers PM, Stone MP, Lloyd RS (2014) Carcinogenesis 35(7): 1461-8
    › Primary publication · 24398669 (PubMed) · PMC4076807 (PubMed Central)
  8. Base-displaced intercalation of the 2-amino-3-methylimidazo[4,5-f]quinolone N2-dG adduct in the NarI DNA recognition sequence. Stavros KM, Hawkins EK, Rizzo CJ, Stone MP (2014) Nucleic Acids Res 42(5): 3450-63
    › Primary publication · 24366876 (PubMed) · PMC3950664 (PubMed Central)
  9. Site-specific stabilization of DNA by a tethered major groove amine, 7-aminomethyl-7-deaza-2'-deoxyguanosine. Szulik MW, Voehler MW, Ganguly M, Gold B, Stone MP (2013) Biochemistry 52(43): 7659-68
    › Primary publication · 24131376 (PubMed) · PMC3812902 (PubMed Central)
  10. Ring-opening of the γ-OH-PdG adduct promotes error-free bypass by the Sulfolobus solfataricus DNA polymerase Dpo4. Shanmugam G, Minko IG, Banerjee S, Christov PP, Kozekov ID, Rizzo CJ, Lloyd RS, Egli M, Stone MP (2013) Chem Res Toxicol 26(9): 1348-60
    › Primary publication · 23947567 (PubMed) · PMC3775444 (PubMed Central)
  11. Recognition of O6-benzyl-2'-deoxyguanosine by a perimidinone-derived synthetic nucleoside: a DNA interstrand stacking interaction. Kowal EA, Lad RR, Pallan PS, Dhummakupt E, Wawrzak Z, Egli M, Sturla SJ, Stone MP (2013) Nucleic Acids Res 41(15): 7566-76
    › Primary publication · 23748954 (PubMed) · PMC3753623 (PubMed Central)
  12. Thermodynamic signature of DNA damage: characterization of DNA with a 5-hydroxy-2'-deoxycytidine·2'-deoxyguanosine base pair. Ganguly M, Szulik MW, Donahue PS, Clancy K, Stone MP, Gold B (2012) Biochemistry 51(9): 2018-27
    › Primary publication · 22332945 (PubMed) · PMC3319050 (PubMed Central)
  13. Replication bypass of the trans-4-Hydroxynonenal-derived (6S,8R,11S)-1,N(2)-deoxyguanosine DNA adduct by the sulfolobus solfataricus DNA polymerase IV. Banerjee S, Christov PP, Kozekova A, Rizzo CJ, Egli M, Stone MP (2012) Chem Res Toxicol 25(2): 422-35
    › Primary publication · 22313351 (PubMed) · PMC3285121 (PubMed Central)
  14. Structures of (5'S)-8,5'-Cyclo-2'-deoxyguanosine Mismatched with dA or dT. Huang H, Das RS, Basu AK, Stone MP (2012) Chem Res Toxicol 25(2): 478-90
    › Primary publication · 22309170 (PubMed) · PMC3285119 (PubMed Central)
  15. Structure of (5'S)-8,5'-cyclo-2'-deoxyguanosine in DNA. Huang H, Das RS, Basu AK, Stone MP (2011) J Am Chem Soc 133(50): 20357-68
    › Primary publication · 22103478 (PubMed) · PMC3279155 (PubMed Central)
  16. Altering the electrostatic potential in the major groove: thermodynamic and structural characterization of 7-deaza-2'-deoxyadenosine:dT base pairing in DNA. Kowal EA, Ganguly M, Pallan PS, Marky LA, Gold B, Egli M, Stone MP (2011) J Phys Chem B 115(47): 13925-34
    › Primary publication · 22059929 (PubMed) · PMC3225014 (PubMed Central)
  17. Chemistry and structural biology of DNA damage and biological consequences. Stone MP, Huang H, Brown KL, Shanmugam G (2011) Chem Biodivers 8(9): 1571-615
    › Primary publication · 21922653 (PubMed) · PMC3714022 (PubMed Central)
  18. Formation of a N2-dG:N2-dG carbinolamine DNA cross-link by the trans-4-hydroxynonenal-derived (6S,8R,11S) 1,N2-dG adduct. Huang H, Wang H, Kozekova A, Rizzo CJ, Stone MP (2011) J Am Chem Soc 133(40): 16101-10
    › Primary publication · 21916419 (PubMed) · PMC3187658 (PubMed Central)
  19. Bypass of aflatoxin B1 adducts by the Sulfolobus solfataricus DNA polymerase IV. Banerjee S, Brown KL, Egli M, Stone MP (2011) J Am Chem Soc 133(32): 12556-68
    › Primary publication · 21790157 (PubMed) · PMC3154525 (PubMed Central)
  20. 1,N2-Etheno-2'-deoxyguanosine adopts the syn conformation about the glycosyl bond when mismatched with deoxyadenosine. Shanmugam G, Kozekov ID, Guengerich FP, Rizzo CJ, Stone MP (2011) Chem Res Toxicol 24(7): 1071-9
    › Primary publication · 21675798 (PubMed) · PMC3138413 (PubMed Central)
  21. Characterization of DNA with an 8-oxoguanine modification. Singh SK, Szulik MW, Ganguly M, Khutsishvili I, Stone MP, Marky LA, Gold B (2011) Nucleic Acids Res 39(15): 6789-801
    › Primary publication · 21572101 (PubMed) · PMC3159457 (PubMed Central)
  22. γ-Hydroxy-1,N2-propano-2'-deoxyguanosine DNA adduct conjugates the N-terminal amine of the KWKK peptide via a carbinolamine linkage. Huang H, Wang H, Voehler MW, Kozekova A, Rizzo CJ, McCullough AK, Lloyd RS, Stone MP (2011) Chem Res Toxicol 24(7): 1123-33
    › Primary publication · 21561113 (PubMed) · PMC3138414 (PubMed Central)
  23. Selective Incision of the alpha-N-Methyl-Formamidopyrimidine Anomer by Escherichia coli Endonuclease IV. Christov PP, Banerjee S, Stone MP, Rizzo CJ (2010) J Nucleic Acids
    › Primary publication · 20798848 (PubMed) · PMC2925382 (PubMed Central)
  24. Minor groove orientation of the KWKK peptide tethered via the N-terminal amine to the acrolein-derived 1,N2-gamma-hydroxypropanodeoxyguanosine lesion with a trimethylene linkage. Huang H, Kozekov ID, Kozekova A, Rizzo CJ, McCullough AK, Lloyd RS, Stone MP (2010) Biochemistry 49(29): 6155-64
    › Primary publication · 20604523 (PubMed) · PMC2907095 (PubMed Central)
  25. Comparison of the in vitro replication of the 7-(2-oxoheptyl)-1,N2-etheno-2'-deoxyguanosine and 1,N2-etheno-2'-deoxyguanosine lesions by Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4). Christov PP, Petrova KV, Shanmugam G, Kozekov ID, Kozekova A, Guengerich FP, Stone MP, Rizzo CJ (2010) Chem Res Toxicol 23(8): 1330-41
    › Primary publication · 20578729 (PubMed) · PMC2922457 (PubMed Central)
  26. DNA cross-link induced by trans-4-hydroxynonenal. Huang H, Kozekov ID, Kozekova A, Wang H, Lloyd RS, Rizzo CJ, Stone MP (2010) Environ Mol Mutagen 51(6): 625-34
    › Primary publication · 20577992 (PubMed) · PMC3140422 (PubMed Central)
  27. The C8-2'-deoxyguanosine adduct of 2-amino-3-methylimidazo[1,2-d]naphthalene, a carbocyclic analogue of the potent mutagen 2-amino-3-methylimidazo[4,5-f]quinoline, is a block to replication in vitro. Christov PP, Chowdhury G, Garmendia CA, Wang F, Stover JS, Elmquist CE, Kozekova A, Angel KC, Turesky RJ, Stone MP, Guengerich FP, Rizzo CJ (2010) Chem Res Toxicol 23(6): 1076-88
    › Primary publication · 20377178 (PubMed) · PMC2891123 (PubMed Central)
  28. Structure of the 1,N(2)-etheno-2'-deoxyguanosine lesion in the 3'-G(epsilon dG)T-5' sequence opposite a one-base deletion. Shanmugam G, Kozekov ID, Guengerich FP, Rizzo CJ, Stone MP (2010) Biochemistry 49(12): 2615-26
    › Primary publication · 20201499 (PubMed) · PMC2844103 (PubMed Central)
  29. Differential base stacking interactions induced by trimethylene interstrand DNA cross-links in the 5'-CpG-3' and 5'-GpC-3' sequence contexts. Huang H, Dooley PA, Harris CM, Harris TM, Stone MP (2009) Chem Res Toxicol 22(11): 1810-6
    › Primary publication · 19916525 (PubMed) · PMC2778138 (PubMed Central)
  30. Structural perturbations induced by the alpha-anomer of the aflatoxin B(1) formamidopyrimidine adduct in duplex and single-strand DNA. Brown KL, Voehler MW, Magee SM, Harris CM, Harris TM, Stone MP (2009) J Am Chem Soc 131(44): 16096-107
    › Primary publication · 19831353 (PubMed) · PMC2773149 (PubMed Central)
  31. The cis-(5R,6S)-thymine glycol lesion occupies the wobble position when mismatched with deoxyguanosine in DNA. Brown KL, Basu AK, Stone MP (2009) Biochemistry 48(41): 9722-33
    › Primary publication · 19772348 (PubMed) · PMC2761728 (PubMed Central)
  32. Stereospecific formation of the (R)-gamma-hydroxytrimethylene interstrand N2-dG:N2-dG cross-link arising from the gamma-OH-1,N2-propano-2'-deoxyguanosine adduct in the 5'-CpG-3' DNA sequence. Huang H, Kim HY, Kozekov ID, Cho YJ, Wang H, Kozekova A, Harris TM, Rizzo CJ, Stone MP (2009) J Am Chem Soc 131(24): 8416-24
    › Primary publication · 19530727 (PubMed) · PMC2753404 (PubMed Central)
  33. Modulation of the structure, catalytic activity, and fidelity of African swine fever virus DNA polymerase X by a reversible disulfide switch. Voehler MW, Eoff RL, McDonald WH, Guengerich FP, Stone MP (2009) J Biol Chem 284(27): 18434-44
    › Primary publication · 19419958 (PubMed) · PMC2709365 (PubMed Central)
  34. Chemistry and biology of DNA containing 1,N(2)-deoxyguanosine adducts of the alpha,beta-unsaturated aldehydes acrolein, crotonaldehyde, and 4-hydroxynonenal. Minko IG, Kozekov ID, Harris TM, Rizzo CJ, Lloyd RS, Stone MP (2009) Chem Res Toxicol 22(5): 759-78
    › Primary publication · 19397281 (PubMed) · PMC2685875 (PubMed Central)
  35. Site-specific synthesis and characterization of oligonucleotides containing an N6-(2-deoxy-D-erythro-pentofuranosyl)-2,6-diamino-3,4-dihydro-4-oxo-5-N-methylformamidopyrimidine lesion, the ring-opened product from N7-methylation of deoxyguanosine. Christov PP, Brown KL, Kozekov ID, Stone MP, Harris TM, Rizzo CJ (2008) Chem Res Toxicol 21(12): 2324-33
    › Primary publication · 19053322 (PubMed) · PMC2701371 (PubMed Central)
  36. The stereochemistry of trans-4-hydroxynonenal-derived exocyclic 1,N2-2'-deoxyguanosine adducts modulates formation of interstrand cross-links in the 5'-CpG-3' sequence. Huang H, Wang H, Qi N, Lloyd RS, Rizzo CJ, Stone MP (2008) Biochemistry 47(44): 11457-72
    › Primary publication · 18847226 (PubMed) · PMC2646759 (PubMed Central)
  37. Structure of the 1,N2-ethenodeoxyguanosine adduct opposite cytosine in duplex DNA: Hoogsteen base pairing at pH 5.2. Shanmugam G, Kozekov ID, Guengerich FP, Rizzo CJ, Stone MP (2008) Chem Res Toxicol 21(9): 1795-805
    › Primary publication · 18693701 (PubMed) · PMC2646752 (PubMed Central)
  38. Interconversion of the cis-5R,6S- and trans-5R,6R-thymine glycol lesions in duplex DNA. Brown KL, Adams T, Jasti VP, Basu AK, Stone MP (2008) J Am Chem Soc 130(35): 11701-10
    › Primary publication · 18681438 (PubMed) · PMC2646635 (PubMed Central)
  39. Rearrangement of the (6S,8R,11S) and (6R,8S,11R) exocyclic 1,N2-deoxyguanosine adducts of trans-4-hydroxynonenal to N2-deoxyguanosine cyclic hemiacetal adducts when placed complementary to cytosine in duplex DNA. Huang H, Wang H, Qi N, Kozekova A, Rizzo CJ, Stone MP (2008) J Am Chem Soc 130(33): 10898-906
    › Primary publication · 18661996 (PubMed) · PMC2646763 (PubMed Central)
  40. Insertion of dNTPs opposite the 1,N2-propanodeoxyguanosine adduct by Sulfolobus solfataricus P2 DNA polymerase IV. Wang Y, Musser SK, Saleh S, Marnett LJ, Egli M, Stone MP (2008) Biochemistry 47(28): 7322-34
    › Primary publication · 18563918 (PubMed) · PMC2753402 (PubMed Central)
  41. The modulation of topoisomerase I-mediated DNA cleavage and the induction of DNA-topoisomerase I crosslinks by crotonaldehyde-derived DNA adducts. Dexheimer TS, Kozekova A, Rizzo CJ, Stone MP, Pommier Y (2008) Nucleic Acids Res 36(12): 4128-36
    › Primary publication · 18550580 (PubMed) · PMC2475617 (PubMed Central)
  42. 3'-Intercalation of a N2-dG 1R-trans-anti-benzo[c]phenanthrene DNA adduct in an iterated (CG)3 repeat. Wang Y, Schnetz-Boutaud NC, Kroth H, Yagi H, Sayer JM, Kumar S, Jerina DM, Stone MP (2008) Chem Res Toxicol 21(7): 1348-58
    › Primary publication · 18549249 (PubMed) · PMC2755548 (PubMed Central)
  43. A bridging water anchors the tethered 5-(3-aminopropyl)-2'-deoxyuridine amine in the DNA major groove proximate to the N+2 C.G base pair: implications for formation of interstrand 5'-GNC-3' cross-links by nitrogen mustards. Wang F, Li F, Ganguly M, Marky LA, Gold B, Egli M, Stone MP (2008) Biochemistry 47(27): 7147-57
    › Primary publication · 18549246 (PubMed) · PMC2730145 (PubMed Central)
  44. Interstrand DNA cross-links induced by alpha,beta-unsaturated aldehydes derived from lipid peroxidation and environmental sources. Stone MP, Cho YJ, Huang H, Kim HY, Kozekov ID, Kozekova A, Wang H, Minko IG, Lloyd RS, Harris TM, Rizzo CJ (2008) Acc Chem Res 41(7): 793-804
    › Primary publication · 18500830 (PubMed) · PMC2785109 (PubMed Central)
  45. Structure of the 1,N2-etheno-2'-deoxyguanosine adduct in duplex DNA at pH 8.6. Shanmugam G, Goodenough AK, Kozekov ID, Guengerich FP, Rizzo CJ, Stone MP (2007) Chem Res Toxicol 20(11): 1601-11
    › Primary publication · 17941687 (PubMed) · PMC2546360 (PubMed Central)
  46. A study of 7-deaza-2'-deoxyguanosine 2'-deoxycytidine base pairing in DNA. Ganguly M, Wang F, Kaushik M, Stone MP, Marky LA, Gold B (2007) Nucleic Acids Res 35(18): 6181-95
    › Primary publication · 17855404 (PubMed) · PMC2094092 (PubMed Central)
  47. Bulge migration of the malondialdehyde OPdG DNA adduct when placed opposite a two-base deletion in the (CpG)3 frameshift hotspot of the Salmonella typhimurium hisD3052 gene. Wang Y, Schnetz-Boutaud NC, Saleh S, Marnett LJ, Stone MP (2007) Chem Res Toxicol 20(8): 1200-10
    › Primary publication · 17645303 (PubMed) · PMC2728581 (PubMed Central)
  48. DNA sequence modulates the conformation of the food mutagen 2-amino-3-methylimidazo[4,5-f]quinoline in the recognition sequence of the NarI restriction enzyme. Wang F, Elmquist CE, Stover JS, Rizzo CJ, Stone MP (2007) Biochemistry 46(29): 8498-516
    › Primary publication · 17602664 (PubMed) · PMC2782574 (PubMed Central)
  49. Conformational differences of the C8-deoxyguanosine adduct of 2-amino-3-methylimidazo[4,5-f]quinoline (IQ) within the NarI recognition sequence. Elmquist CE, Wang F, Stover JS, Stone MP, Rizzo CJ (2007) Chem Res Toxicol 20(3): 445-54
    › Primary publication · 17311423 (PubMed) · PMC2743555 (PubMed Central)
  50. Stereochemistry modulates the stability of reduced interstrand cross-links arising from R- and S-alpha-CH3-gamma-OH-1,N2-propano-2'-deoxyguanosine in the 5'-CpG-3' DNA sequence. Cho YJ, Kozekov ID, Harris TM, Rizzo CJ, Stone MP (2007) Biochemistry 46(10): 2608-21
    › Primary publication · 17305317 (PubMed) · PMC2581467 (PubMed Central)
  51. Structure of the 1,4-Bis(2'-deoxyadenosin-N(6)-yl)-2S,3S-butanediol intrastrand DNA cross-link arising from butadiene diepoxide in the human N-ras codon 61 sequence. Xu W, Merritt WK, Nechev LV, Harris TM, Harris CM, Lloyd RS, Stone MP (2007) Chem Res Toxicol 20(2): 187-98
    › Primary publication · 17256975 (PubMed) · PMC2597494 (PubMed Central)
  52. Unraveling the aflatoxin-FAPY conundrum: structural basis for differential replicative processing of isomeric forms of the formamidopyrimidine-type DNA adduct of aflatoxin B1. Brown KL, Deng JZ, Iyer RS, Iyer LG, Voehler MW, Stone MP, Harris CM, Harris TM (2006) J Am Chem Soc 128(47): 15188-99
    › Primary publication · 17117870 (PubMed) · PMC2693076 (PubMed Central)
  53. A review of the role of the sequence-dependent electrostatic landscape in DNA alkylation patterns. Gold B, Marky LM, Stone MP, Williams LD (2006) Chem Res Toxicol 19(11): 1402-14
    › Primary publication · 17112226 (PubMed) · PMC2532758 (PubMed Central)
  54. Performance of cryogenic probes as a function of ionic strength and sample tube geometry. Voehler MW, Collier G, Young JK, Stone MP, Germann MW (2006) J Magn Reson 183(1): 102-9
    › Primary publication · 16949320 (PubMed) · PMC4852285 (PubMed Central)
  55. Orientation of the crotonaldehyde-derived N2-[3-Oxo-1(S)-methyl-propyl]-dG DNA adduct hinders interstrand cross-link formation in the 5'-CpG-3' sequence. Cho YJ, Wang H, Kozekov ID, Kozekova A, Kurtz AJ, Jacob J, Voehler M, Smith J, Harris TM, Rizzo CJ, Lloyd RS, Stone MP (2006) Chem Res Toxicol 19(8): 1019-29
    › Primary publication · 16918240 (PubMed)
  56. Base-displaced intercalated structure of the food mutagen 2-amino-3-methylimidazo[4,5-f]quinoline in the recognition sequence of the NarI restriction enzyme, a hotspot for -2 bp deletions. Wang F, DeMuro NE, Elmquist CE, Stover JS, Rizzo CJ, Stone MP (2006) J Am Chem Soc 128(31): 10085-95
    › Primary publication · 16881637 (PubMed) · PMC2692337 (PubMed Central)
  57. Stereospecific formation of interstrand carbinolamine DNA cross-links by crotonaldehyde- and acetaldehyde-derived alpha-CH3-gamma-OH-1,N2-propano-2'-deoxyguanosine adducts in the 5'-CpG-3' sequence. Cho YJ, Wang H, Kozekov ID, Kurtz AJ, Jacob J, Voehler M, Smith J, Harris TM, Lloyd RS, Rizzo CJ, Stone MP (2006) Chem Res Toxicol 19(2): 195-208
    › Primary publication · 16485895 (PubMed) · PMC2631444 (PubMed Central)
  58. Spectroscopic characterization of interstrand carbinolamine cross-links formed in the 5'-CpG-3' sequence by the acrolein-derived gamma-OH-1,N2-propano-2'-deoxyguanosine DNA adduct. Cho YJ, Kim HY, Huang H, Slutsky A, Minko IG, Wang H, Nechev LV, Kozekov ID, Kozekova A, Tamura P, Jacob J, Voehler M, Harris TM, Lloyd RS, Rizzo CJ, Stone MP (2005) J Am Chem Soc 127(50): 17686-96
    › Primary publication · 16351098 (PubMed) · PMC2631571 (PubMed Central)
  59. Structure of the 1,4-bis(2'-deoxyadenosin-N6-yl)-2R,3R-butanediol cross-link arising from alkylation of the human N-ras codon 61 by butadiene diepoxide. Merritt WK, Nechev LV, Scholdberg TA, Dean SM, Kiehna SE, Chang JC, Harris TM, Harris CM, Lloyd RS, Stone MP (2005) Biochemistry 44(30): 10081-92
    › Primary publication · 16042385 (PubMed) · PMC2585418 (PubMed Central)
  60. Dual roles of glycosyl torsion angle conformation and stereochemical configuration in butadiene oxide-derived N1 beta-hydroxyalkyl deoxyinosine adducts: a structural perspective. Merritt WK, Kowalczyk A, Scholdberg TA, Dean SM, Harris TM, Harris CM, Lloyd RS, Stone MP (2005) Chem Res Toxicol 18(7): 1098-107
    › Primary publication · 16022502 (PubMed) · PMC2584607 (PubMed Central)
  61. Structure of B-DNA with cations tethered in the major groove. Moulaei T, Maehigashi T, Lountos GT, Komeda S, Watkins D, Stone MP, Marky LA, Li JS, Gold B, Williams LD (2005) Biochemistry 44(20): 7458-68
    › Primary publication · 15895989 (PubMed)
  62. Structure of an oligodeoxynucleotide containing a butadiene oxide-derived N1 beta-hydroxyalkyl deoxyinosine adduct in the human N-ras codon 61 sequence. Scholdberg TA, Merritt WK, Dean SM, Kowalcyzk A, Harris CM, Harris TM, Rizzo CJ, Lloyd RS, Stone MP (2005) Biochemistry 44(9): 3327-37
    › Primary publication · 15736943 (PubMed)
  63. Mispairing of a site specific major groove (2S,3S)-N6-(2,3,4-trihydroxybutyl)-2'-deoxyadenosyl DNA Adduct of butadiene diol epoxide with deoxyguanosine: formation of a dA(anti).dG(anti) pairing interaction. Scholdberg TA, Nechev LV, Merritt WK, Harris TM, Harris CM, Lloyd RS, Stone MP (2005) Chem Res Toxicol 18(2): 145-53
    › Primary publication · 15720118 (PubMed)
  64. In vitro bypass of malondialdehyde-deoxyguanosine adducts: differential base selection during extension by the Klenow fragment of DNA polymerase I is the critical determinant of replication outcome. Hashim MF, Riggins JN, Schnetz-Boutaud N, Voehler M, Stone MP, Marnett LJ (2004) Biochemistry 43(37): 11828-35
    › Primary publication · 15362868 (PubMed)
  65. Stereospecific structural perturbations arising from adenine N(6) butadiene triol adducts in duplex DNA. Merritt WK, Scholdberg TA, Nechev LV, Harris TM, Harris CM, Lloyd RS, Stone MP (2004) Chem Res Toxicol 17(8): 1007-19
    › Primary publication · 15310233 (PubMed)
  66. Structure of a site specific major groove (2S,3S)-N6-(2,3,4-trihydroxybutyl)-2'-deoxyadenosyl DNA adduct of butadiene diol epoxide. Scholdberg TA, Nechev LV, Merritt WK, Harris TM, Harris CM, Lloyd RS, Stone MP (2004) Chem Res Toxicol 17(6): 717-30
    › Primary publication · 15206893 (PubMed)
  67. Wobble dC.dA pairing 5' to the cationic guanine N7 8,9-dihydro-8-(N7-guanyl)-9-hydroxyaflatoxin B1 adduct: implications for nontargeted AFB1 mutagenesis. Giri I, Stone MP (2003) Biochemistry 42(23): 7023-34
    › Primary publication · 12795597 (PubMed)
  68. Minor groove orientation for the (1S,2R,3S,4R)-N2- [1-(1,2,3,4-tetrahydro-2,3,4-trihydroxybenz[a]anthracenyl)]-2'-deoxyguanosyl adduct in the N-ras codon 12 sequence. Kim HY, Wilkinson AS, Harris CM, Harris TM, Stone MP (2003) Biochemistry 42(8): 2328-38
    › Primary publication · 12600200 (PubMed)
  69. NMR determination of the conformation of a trimethylene interstrand cross-link in an oligodeoxynucleotide duplex containing a 5'-d(GpC) motif. Dooley PA, Zhang M, Korbel GA, Nechev LV, Harris CM, Stone MP, Harris TM (2003) J Am Chem Soc 125(1): 62-72
    › Primary publication · 12515507 (PubMed)
  70. DNA interchain cross-links formed by acrolein and crotonaldehyde. Kozekov ID, Nechev LV, Moseley MS, Harris CM, Rizzo CJ, Stone MP, Harris TM (2003) J Am Chem Soc 125(1): 50-61
    › Primary publication · 12515506 (PubMed)
  71. Thermal stabilization of the DNA duplex by adducts of aflatoxin B1. Giri I, Stone MP (2002) Biopolymers 65(3): 190-201
    › Primary publication · 12228924 (PubMed)
  72. Detection of an interchain carbinolamine cross-link formed in a CpG sequence by the acrolein DNA adduct gamma-OH-1,N( 2)-propano-2'-deoxyguanosine. Kim HY, Voehler M, Harris TM, Stone MP (2002) J Am Chem Soc 124(32): 9324-5
    › Primary publication · 12166998 (PubMed)
  73. Structure of a tethered cationic 3-aminopropyl chain incorporated into an oligodeoxynucleotide: evidence for 3'-orientation in the major groove accompanied by DNA bending. Li Z, Huang L, Dande P, Gold B, Stone MP (2002) J Am Chem Soc 124(29): 8553-60
    › Primary publication · 12121096 (PubMed)
  74. Structural refinement of the 8,9-dihydro-8-(N7-guanyl)-9-hydroxy-aflatoxin B(1) adduct in a 5'-Cp(AFB)G-3' sequence. Giri I, Jenkins MD, Schnetz-Boutaud NC, Stone MP (2002) Chem Res Toxicol 15(5): 638-47
    › Primary publication · 12018984 (PubMed)
  75. Mispairing of the 8,9-dihydro-8-(N7-guanyl)-9-hydroxy-aflatoxin B1 adduct with deoxyadenosine results in extrusion of the mismatched dA toward the major groove. Giri I, Johnston DS, Stone MP (2002) Biochemistry 41(17): 5462-72
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  76. Structure of the 1,N(2)-propanodeoxyguanosine adduct in a three-base DNA hairpin loop derived from a palindrome in the Salmonella typhimurium hisD3052 gene. Weisenseel JP, Reddy GR, Marnett LJ, Stone MP (2002) Chem Res Toxicol 15(2): 140-52
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  77. Structure of an oligodeoxynucleotide containing a 1,N(2)-propanodeoxyguanosine adduct positioned in a palindrome derived from the Salmonella typhimurium hisD3052 gene: Hoogsteen pairing at pH 5.2. Weisenseel JP, Reddy GR, Marnett LJ, Stone MP (2002) Chem Res Toxicol 15(2): 127-39
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  78. Structure of the malondialdehyde deoxyguanosine adduct M1G when placed opposite a two-base deletion in the (CpG)3 frameshift hotspot of the Salmonella typhimurium hisD3052 gene. Schnetz-Boutaud NC, Saleh S, Marnett LJ, Stone MP (2001) Adv Exp Med Biol : 513-6
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  79. The exocyclic 1,N2-deoxyguanosine pyrimidopurinone M1G is a chemically stable DNA adduct when placed opposite a two-base deletion in the (CpG)3 frameshift hotspot of the Salmonella typhimurium hisD3052 gene. Schnetz-Boutaud NC, Saleh S, Marnett LJ, Stone MP (2001) Biochemistry 40(51): 15638-49
    › Primary publication · 11747439 (PubMed)