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Publications

The following timeline graph is generated from all co-authored publications.

Featured publications are shown below:

  1. Effects of Cancer Stage and Treatment Differences on Racial Disparities in Survival From Colon Cancer: A United States Population-Based Study. Lai Y, Wang C, Civan JM, Palazzo JP, Ye Z, Hyslop T, Lin J, Myers RE, Li B, Jiang B, Sama A, Xing J, Yang H (2016) Gastroenterology 150(5): 1135-46
    › Primary publication · 26836586 (PubMed) · PMC4842115 (PubMed Central)
  2. A computational method for genotype calling in family-based sequencing data. Chang LC, Li B, Fang Z, Vrieze S, McGue M, Iacono WG, Tseng GC, Chen W (2016) BMC Bioinformatics : 37
    › Primary publication · 26772743 (PubMed) · PMC4715317 (PubMed Central)
  3. Joint detection of copy number variations in parent-offspring trios. Liu Y, Liu J, Lu J, Peng J, Juan L, Zhu X, Li B, Wang Y (2016) Bioinformatics 32(8): 1130-7
    › Primary publication · 26644415 (PubMed) · PMC4907378 (PubMed Central)
  4. Prospective assessment of the prognostic value of circulating tumor cells and their clusters in patients with advanced-stage breast cancer. Mu Z, Wang C, Ye Z, Austin L, Civan J, Hyslop T, Palazzo JP, Jaslow R, Li B, Myers RE, Jiang J, Xing J, Yang H, Cristofanilli M (2015) Breast Cancer Res Treat 154(3): 563-71
    › Primary publication · 26573830 (PubMed)
  5. Associating Multivariate Quantitative Phenotypes with Genetic Variants in Family Samples with a Novel Kernel Machine Regression Method. Yan Q, Weeks DE, Celedón JC, Tiwari HK, Li B, Wang X, Lin WY, Lou XY, Gao G, Chen W, Liu N (2015) Genetics 201(4): 1329-39
    › Primary publication · 26482791 (PubMed) · PMC4676518 (PubMed Central)
  6. Genetic and chromosomal alterations in Kenyan Wilms Tumor. Lovvorn HN, Pierce J, Libes J, Li B, Wei Q, Correa H, Gouffon J, Clark PE, Axt JR, Hansen E, Newton M, O'Neill JA, Kenyan Wilms Tumor Consortium (2015) Genes Chromosomes Cancer 54(11): 702-15
    › Primary publication · 26274016 (PubMed) · PMC4567398 (PubMed Central)
  7. Leveraging Identity-by-Descent for Accurate Genotype Inference in Family Sequencing Data. Li B, Wei Q, Zhan X, Zhong X, Chen W, Li C, Haines J (2015) PLoS Genet 11(6): e1005271
    › Primary publication · 26043085 (PubMed) · PMC4456389 (PubMed Central)
  8. A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis. Chen R, Wei Q, Zhan X, Zhong X, Sutcliffe JS, Cox NJ, Cook EH, Li C, Chen W, Li B (2015) Bioinformatics 31(9): 1452-9
    › Primary publication · 25568282 (PubMed) · PMC4410665 (PubMed Central)
  9. A Bayesian framework for de novo mutation calling in parents-offspring trios. Wei Q, Zhan X, Zhong X, Liu Y, Han Y, Chen W, Li B (2015) Bioinformatics 31(9): 1375-81
    › Primary publication · 25535243 (PubMed) · PMC4410659 (PubMed Central)
  10. Improved variant calling accuracy by merging replicates in whole-exome sequencing studies. Zhang Y, Li B, Li C, Cai Q, Zheng W, Long J (2014) Biomed Res Int : 319534
    › Primary publication · 25162009 (PubMed) · PMC4137624 (PubMed Central)
  11. Genome-wide association analysis in East Asians identifies breast cancer susceptibility loci at 1q32.1, 5q14.3 and 15q26.1. Cai Q, Zhang B, Sung H, Low SK, Kweon SS, Lu W, Shi J, Long J, Wen W, Choi JY, Noh DY, Shen CY, Matsuo K, Teo SH, Kim MK, Khoo US, Iwasaki M, Hartman M, Takahashi A, Ashikawa K, Matsuda K, Shin MH, Park MH, Zheng Y, Xiang YB, Ji BT, Park SK, Wu PE, Hsiung CN, Ito H, Kasuga Y, Kang P, Mariapun S, Ahn SH, Kang HS, Chan KY, Man EP, Iwata H, Tsugane S, Miao H, Liao J, Nakamura Y, Kubo M, DRIVE GAME-ON Consortium, Delahanty RJ, Zhang Y, Li B, Li C, Gao YT, Shu XO, Kang D, Zheng W (2014) Nat Genet 46(8): 886-90
    › Primary publication · 25038754 (PubMed) · PMC4127632 (PubMed Central)
  12. Rare and common variants in extracellular matrix gene Fibrillin 2 (FBN2) are associated with macular degeneration. Ratnapriya R, Zhan X, Fariss RN, Branham KE, Zipprer D, Chakarova CF, Sergeev YV, Campos MM, Othman M, Friedman JS, Maminishkis A, Waseem NH, Brooks M, Rajasimha HK, Edwards AO, Lotery A, Klein BE, Truitt BJ, Li B, Schaumberg DA, Morgan DJ, Morrison MA, Souied E, Tsironi EE, Grassmann F, Fishman GA, Silvestri G, Scholl HP, Kim IK, Ramke J, Tuo J, Merriam JE, Merriam JC, Park KH, Olson LM, Farrer LA, Johnson MP, Peachey NS, Lathrop M, Baron RV, Igo RP, Klein R, Hagstrom SA, Kamatani Y, Martin TM, Jiang Y, Conley Y, Sahel JA, Zack DJ, Chan CC, Pericak-Vance MA, Jacobson SG, Gorin MB, Klein ML, Allikmets R, Iyengar SK, Weber BH, Haines JL, Léveillard T, Deangelis MM, Stambolian D, Weeks DE, Bhattacharya SS, Chew EY, Heckenlively JR, Abecasis GR, Swaroop A (2014) Hum Mol Genet 23(21): 5827-37
    › Primary publication · 24899048 (PubMed) · PMC4189898 (PubMed Central)
  13. Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk. Zhang B, Jia WH, Matsuda K, Kweon SS, Matsuo K, Xiang YB, Shin A, Jee SH, Kim DH, Cai Q, Long J, Shi J, Wen W, Yang G, Zhang Y, Li C, Li B, Guo Y, Ren Z, Ji BT, Pan ZZ, Takahashi A, Shin MH, Matsuda F, Gao YT, Oh JH, Kim S, Ahn YO, Genetics and Epidemiology of Colorectal Cancer Consortium (GECCO), Chan AT, Chang-Claude J, Slattery ML, Colorectal Transdisciplinary (CORECT) Study, Gruber SB, Schumacher FR, Stenzel SL, Colon Cancer Family Registry (CCFR), Casey G, Kim HR, Jeong JY, Park JW, Li HL, Hosono S, Cho SH, Kubo M, Shu XO, Zeng YX, Zheng W (2014) Nat Genet 46(6): 533-42
    › Primary publication · 24836286 (PubMed) · PMC4068797 (PubMed Central)
  14. A gradient-boosting approach for filtering de novo mutations in parent-offspring trios. Liu Y, Li B, Tan R, Zhu X, Wang Y (2014) Bioinformatics 30(13): 1830-6
    › Primary publication · 24618463 (PubMed) · PMC4071207 (PubMed Central)
  15. Rare coding variants and breast cancer risk: evaluation of susceptibility Loci identified in genome-wide association studies. Zhang Y, Long J, Lu W, Shu XO, Cai Q, Zheng Y, Li C, Li B, Gao YT, Zheng W (2014) Cancer Epidemiol Biomarkers Prev 23(4): 622-8
    › Primary publication · 24470074 (PubMed) · PMC3976694 (PubMed Central)
  16. Transcriptome analysis of psoriasis in a large case-control sample: RNA-seq provides insights into disease mechanisms. Li B, Tsoi LC, Swindell WR, Gudjonsson JE, Tejasvi T, Johnston A, Ding J, Stuart PE, Xing X, Kochkodan JJ, Voorhees JJ, Kang HM, Nair RP, Abecasis GR, Elder JT (2014) J Invest Dermatol 134(7): 1828-38
    › Primary publication · 24441097 (PubMed) · PMC4057954 (PubMed Central)
  17. QPLOT: a quality assessment tool for next generation sequencing data. Li B, Zhan X, Wing MK, Anderson P, Kang HM, Abecasis GR (2013) Biomed Res Int : 865181
    › Primary publication · 24319692 (PubMed) · PMC3844194 (PubMed Central)
  18. Recurrent tissue-specific mtDNA mutations are common in humans. Samuels DC, Li C, Li B, Song Z, Torstenson E, Boyd Clay H, Rokas A, Thornton-Wells TA, Moore JH, Hughes TM, Hoffman RD, Haines JL, Murdock DG, Mortlock DP, Williams SM (2013) PLoS Genet 9(11): e1003929
    › Primary publication · 24244193 (PubMed) · PMC3820769 (PubMed Central)
  19. Identifying rare variants associated with complex traits via sequencing. Li B, Liu DJ, Leal SM (2013) Curr Protoc Hum Genet : Unit 1.26
    › Primary publication · 23853079 (PubMed) · PMC3830981 (PubMed Central)
  20. ASAP: an environment for automated preprocessing of sequencing data. Torstenson ES, Li B, Li C (2013) BMC Res Notes : 5
    › Primary publication · 23289815 (PubMed) · PMC3541347 (PubMed Central)