Neighboring-nucleotide effects on single nucleotide polymorphisms: a study of 2.6 million polymorphisms across the human genome. Zhao Z, Boerwinkle E (2002) Genome Res 12: 1679-86 Integrated YAC contig map of the Prader-Willi/Angelman region on chromosome 15q11-q13 with average STS spacing of 35 kb. Christian SL, Bhatt NK, Martin SA, Sutcliffe JS, Kubota T, Huang B, Mutirangura A, Chinault AC, Beaudet AL, Ledbetter DH (1998) Genome Res 8: 146-57 Evidence for variable selective pressures at a large secondary structure of the human mitochondrial DNA control region. Pereira F, Soares P, Carneiro J, Pereira L, Richards MB, Samuels DC, Amorim A (2008) Mol Biol Evol 25: 2759-70 CpG island density and its correlations with genomic features in mammalian genomes. Han L, Su B, Li WH, Zhao Z (2008) Genome Biol 9: R79 Expression of mammalian glutathione S-transferase 5-5 in Salmonella typhimurium TA1535 leads to base-pair mutations upon exposure to dihalomethanes. Thier R, Taylor JB, Pemble SE, Humphreys WG, Persmark M, Ketterer B, Guengerich FP (1993) Proc Natl Acad Sci U S A 90: 8576-80 Induction of mutations by replication of malondialdehyde-modified M13 DNA in Escherichia coli: determination of the extent of DNA modification, genetic requirements for mutagenesis, and types of mutations induced. Benamira M, Johnson K, Chaudhary A, Bruner K, Tibbetts C, Marnett LJ (1995) Carcinogenesis 16: 93-9 Distinct mutations in yeast TAF(II)25 differentially affect the composition of TFIID and SAGA complexes as well as global gene expression patterns. Kirschner DB, vom Baur E, Thibault C, Sanders SL, Gangloff YG, Davidson I, Weil PA, Tora L (2002) Mol Cell Biol 22: 3178-93 Ongoing GC-biased evolution is widespread in the human genome and enriched near recombination hot spots. Katzman S, Capra JA, Haussler D, Pollard KS (2011) Genome Biol Evol 3: 614-26 Substitution patterns are GC-biased in divergent sequences across the metazoans. Capra JA, Pollard KS (2011) Genome Biol Evol 3: 516-27 A Genome-Scale Investigation of How Sequence, Function, and Tree-Based Gene Properties Influence Phylogenetic Inference. Shen XX, Salichos L, Rokas A (2016) Genome Biol Evol 8: 2565-80 Evidence that an adrenal-specific nuclear protein regulates the cAMP responsiveness of the human CYP21B (P450C21) gene. Kagawa N, Waterman MR (1991) J Biol Chem 266: 11199-204 Topoisomerase II-mediated DNA cleavage and religation in the absence of base pairing. Abasic lesions as a tool to dissect enzyme mechanism. Kingma PS, Osheroff N (1998) J Biol Chem 273: 17999-8002 Directionality of point mutation and 5-methylcytosine deamination rates in the chimpanzee genome. Jiang C, Zhao Z (2006) BMC Genomics 7: 316 Characterization of a highly repetitive sequence DNA family in rat. Sealy L, Hartley J, Donelson J, Chalkley R, Hutchison N, Hamkalo B (1981) J Mol Biol 145: 291-318 Analysis of an insulin gene transcription control element. Positive and negative regulation appears to be mediated by different element sequences. Stein R, Henderson E, Cordle SR (1994) FEBS Lett 338: 187-90 Pre-steady-state kinetics of nucleotide insertion following 8-oxo-7,8-dihydroguanine base pair mismatches by bacteriophage T7 DNA polymerase exo-. Furge LL, Guengerich FP (1998) Biochemistry 37: 3567-74 Wobble dC.dA pairing 5' to the cationic guanine N7 8,9-dihydro-8-(N7-guanyl)-9-hydroxyaflatoxin B1 adduct: implications for nontargeted AFB1 mutagenesis. Giri I, Stone MP (2003) Biochemistry 42: 7023-34 Steady-state and pre-steady-state kinetic analysis of 8-oxo-7,8-dihydroguanosine triphosphate incorporation and extension by replicative and repair DNA polymerases. Einolf HJ, Schnetz-Boutaud N, Guengerich FP (1998) Biochemistry 37: 13300-12 Two-dimensional 1H NMR studies of 32-base-pair synthetic immobile Holliday junctions: complete assignments of the labile protons and identification of the base-pairing scheme. Chen SM, Heffron F, Chazin WJ (1993) Biochemistry 32: 319-26 Comparison of the DNA-alkylating properties and mutagenic responses of a series of S-(2-haloethyl)-substituted cysteine and glutathione derivatives. Humphreys WG, Kim DH, Cmarik JL, Shimada T, Guengerich FP (1990) Biochemistry 29: 10342-50 Steady-state and pre-steady-state kinetic analysis of dNTP insertion opposite 8-oxo-7,8-dihydroguanine by Escherichia coli polymerases I exo- and II exo-. Lowe LG, Guengerich FP (1996) Biochemistry 35: 9840-9 Two-dimensional 1H NMR studies of synthetic immobile Holliday junctions. Chen SM, Heffron F, Leupin W, Chazin WJ (1991) Biochemistry 30: 766-71 Mispairing of the 8,9-dihydro-8-(N7-guanyl)-9-hydroxy-aflatoxin B1 adduct with deoxyadenosine results in extrusion of the mismatched dA toward the major groove. Giri I, Johnston DS, Stone MP (2002) Biochemistry 41: 5462-72 The influence of neighboring-nucleotide composition on single nucleotide polymorphisms (SNPs) in the mouse genome and its comparison with human SNPs. Zhang F, Zhao Z (2004) Genomics 84: 785-95 Sequence context analysis in the mouse genome: single nucleotide polymorphisms and CpG island sequences. Zhao Z, Zhang F (2006) Genomics 87: 68-74 Mutational spectrum in the recent human genome inferred by single nucleotide polymorphisms. Jiang C, Zhao Z (2006) Genomics 88: 527-34 Features of recent codon evolution: a comparative polymorphism-fixation study. Zhao Z, Jiang C (2010) J Biomed Biotechnol 2010: 202918 Conformational studies of the duplex d-(CCAAAAATTTCC).d-(GGAAATTTTTGG) containing a (dA)5 tract using two-dimensional 1H-n.m.r. spectroscopy. Chen SM, Leupin W, Chazin WJ (1992) Int J Biol Macromol 14: 57-63 Sequence context analysis of 8.2 million single nucleotide polymorphisms in the human genome. Zhao Z, Zhang F (2006) Gene 366: 316-24 NMR studies of complex DNA structures: the Holliday junction intermediate in genetic recombination. Carlström G, Chen SM, Miick S, Chazin WJ (1995) Methods Enzymol 261: 163-82 Cloning of adipose triglyceride lipase complementary deoxyribonucleic acid in poultry and expression of adipose triglyceride lipase during development of adipose in chickens. Lee K, Shin J, Latshaw JD, Suh Y, Serr J (2009) Poult Sci 88: 620-30
Hints: (1) double-click or double-tap to navigate to a node. (2) Grab a node and move it to arrange the graph.