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Creative Data Solutions (CDS) is a Vanderbilt Shared Resource and has extensive experience in providing effective and robust solutions to challenges pertaining to research data using modern informatics and bioinformatics approaches.
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Connections to Genes, Reporter are shown below. Double-click or tap a node for more information.
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Publications
- Active medulloblastoma enhancers reveal subgroup-specific cellular origins.
Lin CY, Erkek S, Tong Y, Yin L, Federation AJ, Zapatka M, Haldipur P, Kawauchi D, Risch T, Warnatz HJ, Worst BC, Ju B, Orr BA, Zeid R, Polaski DR, Segura-Wang M, Waszak SM, Jones DT, Kool M, Hovestadt V, Buchhalter I, Sieber L, Johann P, Chavez L, Gröschel S, Ryzhova M, Korshunov A, Chen W, Chizhikov VV, Millen KJ, Amstislavskiy V, Lehrach H, Yaspo ML, Eils R, Lichter P, Korbel JO, Pfister SM, Bradner JE, Northcott PA
(2016) Nature 530: 57-62 - Mox2 is a component of the genetic hierarchy controlling limb muscle development.
Mankoo BS, Collins NS, Ashby P, Grigorieva E, Pevny LH, Candia A, Wright CV, Rigby PW, Pachnis V
(1999) Nature 400: 69-73 - High-efficiency deleter mice show that FLPe is an alternative to Cre-loxP.
Rodríguez CI, Buchholz F, Galloway J, Sequerra R, Kasper J, Ayala R, Stewart AF, Dymecki SM
(2000) Nat Genet 25: 139-40 - Generalized lacZ expression with the ROSA26 Cre reporter strain.
Soriano P
(1999) Nat Genet 21: 70-1 - Regulation of transcriptional activation domain function by ubiquitin.
Salghetti SE, Caudy AA, Chenoweth JG, Tansey WP
(2001) Science 293: 1651-3 - Selective use of TBP and TFIIB revealed by a TATA-TBP-TFIIB array with altered specificity.
Tansey WP, Herr W
(1997) Science 275: 829-31 - The t(8;21) fusion protein, AML1 ETO, specifically represses the transcription of the p14(ARF) tumor suppressor in acute myeloid leukemia.
Linggi B, Müller-Tidow C, van de Locht L, Hu M, Nip J, Serve H, Berdel WE, van der Reijden B, Quelle DE, Rowley JD, Cleveland J, Jansen JH, Pandolfi PP, Hiebert SW
(2002) Nat Med 8: 743-50 - A primary culture system for functional analysis of C. elegans neurons and muscle cells.
Christensen M, Estevez A, Yin X, Fox R, Morrison R, McDonnell M, Gleason C, Miller DM, Strange K
(2002) Neuron 33: 503-14 - Extracellular proteins needed for C. elegans mechanosensation.
Du H, Gu G, William CM, Chalfie M
(1996) Neuron 16: 183-94 - Nox1 overexpression potentiates angiotensin II-induced hypertension and vascular smooth muscle hypertrophy in transgenic mice.
Dikalova A, Clempus R, Lassègue B, Cheng G, McCoy J, Dikalov S, San Martin A, Lyle A, Weber DS, Weiss D, Taylor WR, Schmidt HH, Owens GK, Lambeth JD, Griendling KK
(2005) Circulation 112: 2668-76 - Reciprocal requirements for EDA/EDAR/NF-kappaB and Wnt/beta-catenin signaling pathways in hair follicle induction.
Zhang Y, Tomann P, Andl T, Gallant NM, Huelsken J, Jerchow B, Birchmeier W, Paus R, Piccolo S, Mikkola ML, Morrisey EE, Overbeek PA, Scheidereit C, Millar SE, Schmidt-Ullrich R
(2009) Dev Cell 17: 49-61 - Genetic labeling does not detect epithelial-to-mesenchymal transition of cholangiocytes in liver fibrosis in mice.
Scholten D, Osterreicher CH, Scholten A, Iwaisako K, Gu G, Brenner DA, Kisseleva T
(2010) Gastroenterology 139: 987-98 - Identification and Characterization of Unique Neutralizing Antibodies to Mouse EGF Receptor.
Jae Huh W, Niitsu H, Carney B, McKinley ET, Houghton JL, Coffey RJ
(2020) Gastroenterology 158: 1500-1502 - Regulation of pancreas plasticity and malignant transformation by Akt signaling.
Elghazi L, Weiss AJ, Barker DJ, Callaghan J, Staloch L, Sandgren EP, Gannon M, Adsay VN, Bernal-Mizrachi E
(2009) Gastroenterology 136: 1091-103 - Epithelial hypoxia-inducible factor-1 is protective in murine experimental colitis.
Karhausen J, Furuta GT, Tomaszewski JE, Johnson RS, Colgan SP, Haase VH
(2004) J Clin Invest 114: 1098-106 - Particle-mediated gene transfer with transforming growth factor-beta1 cDNAs enhances wound repair in rat skin.
Benn SI, Whitsitt JS, Broadley KN, Nanney LB, Perkins D, He L, Patel M, Morgan JR, Swain WF, Davidson JM
(1996) J Clin Invest 98: 2894-902 - Ectopic pancreas formation in Hes1 -knockout mice reveals plasticity of endodermal progenitors of the gut, bile duct, and pancreas.
Fukuda A, Kawaguchi Y, Furuyama K, Kodama S, Horiguchi M, Kuhara T, Koizumi M, Boyer DF, Fujimoto K, Doi R, Kageyama R, Wright CV, Chiba T
(2006) J Clin Invest 116: 1484-93 - The forkhead transcription factor Foxo1 links insulin signaling to Pdx1 regulation of pancreatic beta cell growth.
Kitamura T, Nakae J, Kitamura Y, Kido Y, Biggs WH, Wright CV, White MF, Arden KC, Accili D
(2002) J Clin Invest 110: 1839-47 - Communication between myocytes and fibroblasts in cardiac remodeling in angiotensin chimeric mice.
Matsusaka T, Katori H, Inagami T, Fogo A, Ichikawa I
(1999) J Clin Invest 103: 1451-8 - Principles of Broad and Potent Antiviral Human Antibodies: Insights for Vaccine Design.
Crowe JE
(2017) Cell Host Microbe 22: 193-206 - Circadian orchestration of gene expression in cyanobacteria.
Liu Y, Tsinoremas NF, Johnson CH, Lebedeva NV, Golden SS, Ishiura M, Kondo T
(1995) Genes Dev 9: 1469-78 - Bmp4 is required for the generation of primordial germ cells in the mouse embryo.
Lawson KA, Dunn NR, Roelen BA, Zeinstra LM, Davis AM, Wright CV, Korving JP, Hogan BL
(1999) Genes Dev 13: 424-36 - Differential expression of adenosine receptors in human endothelial cells: role of A2B receptors in angiogenic factor regulation.
Feoktistov I, Goldstein AE, Ryzhov S, Zeng D, Belardinelli L, Voyno-Yasenetskaya T, Biaggioni I
(2002) Circ Res 90: 531-8 - Novel role of gp91(phox)-containing NAD(P)H oxidase in vascular endothelial growth factor-induced signaling and angiogenesis.
Ushio-Fukai M, Tang Y, Fukai T, Dikalov SI, Ma Y, Fujimoto M, Quinn MT, Pagano PJ, Johnson C, Alexander RW
(2002) Circ Res 91: 1160-7 - Matrix metalloproteinase-9 is required for adequate angiogenic revascularization of ischemic tissues: potential role in capillary branching.
Johnson C, Sung HJ, Lessner SM, Fini ME, Galis ZS
(2004) Circ Res 94: 262-8 - A G/C element mediates repression of the SM22alpha promoter within phenotypically modulated smooth muscle cells in experimental atherosclerosis.
Wamhoff BR, Hoofnagle MH, Burns A, Sinha S, McDonald OG, Owens GK
(2004) Circ Res 95: 981-8 - Distinct roles of class I and class III phosphatidylinositol 3-kinases in phagosome formation and maturation.
Vieira OV, Botelho RJ, Rameh L, Brachmann SM, Matsuo T, Davidson HW, Schreiber A, Backer JM, Cantley LC, Grinstein S
(2001) J Cell Biol 155: 19-25 - A common functional promoter variant links CNR1 gene expression to HDL cholesterol level.
Feng Q, Vickers KC, Anderson MP, Levin MG, Chen W, Harrison DG, Wilke RA
(2013) Nat Commun 4: 1973 - The Hsp90-binding peptidylprolyl isomerase FKBP52 potentiates glucocorticoid signaling in vivo.
Riggs DL, Roberts PJ, Chirillo SC, Cheung-Flynn J, Prapapanich V, Ratajczak T, Gaber R, Picard D, Smith DF
(2003) EMBO J 22: 1158-67 - Dopamine transporter/syntaxin 1A interactions regulate transporter channel activity and dopaminergic synaptic transmission.
Carvelli L, Blakely RD, DeFelice LJ
(2008) Proc Natl Acad Sci U S A 105: 14192-7 - Targeted oncogenesis of hormone-negative pancreatic islet progenitor cells.
Jetton TL, Moates JM, Lindner J, Wright CV, Magnuson MA
(1998) Proc Natl Acad Sci U S A 95: 8654-9 - The glyceryl ester of prostaglandin E2 mobilizes calcium and activates signal transduction in RAW264.7 cells.
Nirodi CS, Crews BC, Kozak KR, Morrow JD, Marnett LJ
(2004) Proc Natl Acad Sci U S A 101: 1840-5 - Real-time luminescence monitoring of cell-cycle and respiratory oscillations in yeast.
Robertson JB, Stowers CC, Boczko E, Johnson CH
(2008) Proc Natl Acad Sci U S A 105: 17988-93 - Circadian gene expression in mammalian fibroblasts revealed by real-time luminescence reporting: temperature compensation and damping.
Izumo M, Johnson CH, Yamazaki S
(2003) Proc Natl Acad Sci U S A 100: 16089-94 - Prostate cancer in a transgenic mouse.
Greenberg NM, DeMayo F, Finegold MJ, Medina D, Tilley WD, Aspinall JO, Cunha GR, Donjacour AA, Matusik RJ, Rosen JM
(1995) Proc Natl Acad Sci U S A 92: 3439-43 - Cerebellar GABAergic progenitors adopt an external granule cell-like phenotype in the absence of Ptf1a transcription factor expression.
Pascual M, Abasolo I, Mingorance-Le Meur A, Martínez A, Del Rio JA, Wright CV, Real FX, Soriano E
(2007) Proc Natl Acad Sci U S A 104: 5193-8 - Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2.
Young JI, Hong EP, Castle JC, Crespo-Barreto J, Bowman AB, Rose MF, Kang D, Richman R, Johnson JM, Berget S, Zoghbi HY
(2005) Proc Natl Acad Sci U S A 102: 17551-8 - Mesothelium contributes to vascular smooth muscle and mesenchyme during lung development.
Que J, Wilm B, Hasegawa H, Wang F, Bader D, Hogan BL
(2008) Proc Natl Acad Sci U S A 105: 16626-30 - Experimental control of pancreatic development and maintenance.
Holland AM, Hale MA, Kagami H, Hammer RE, MacDonald RJ
(2002) Proc Natl Acad Sci U S A 99: 12236-41 - Antiglucocorticoid activity of hepatocyte nuclear factor-6.
Pierreux CE, Stafford J, Demonte D, Scott DK, Vandenhaute J, O'Brien RM, Granner DK, Rousseau GG, Lemaigre FP
(1999) Proc Natl Acad Sci U S A 96: 8961-6
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