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•  Alicia Beeghly-Fadiel
•  Amy Kendall

•  James McBride
•  Melanie Ohi

•  Sergey Dikalov
•  Terunaga Nakagawa

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• Cell Imaging Shared Resource

Publications

• Analysis of tissue specimens by matrix-assisted laser desorption/ionization imaging mass spectrometry in biological and clinical research.
  Norris JL, Caprioli RM
  (2013) Chem Rev 113: 2309-42
• Interaction of artificial phospholipid membranes with isolated polymorphonuclear leucocytic granules.
  Hawiger J, Collins RD, Horn RG, Koenig MG
  (1969) Nature 222: 276-8
• Impaired insulin secretion and beta-cell loss in tissue-specific knockout mice with mitochondrial diabetes.
  Silva JP, Köhler M, Graff C, Oldfors A, Magnuson MA, Berggren PO, Larsson NG
  (2000) Nat Genet 26: 336-40
• Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data.
  Denny JC, Bastarache L, Ritchie MD, Carroll RJ, Zink R, Mosley JD, Field JR, Pulley JM, Ramirez AH, Bowton E, Basford MA, Carrell DS, Peissig PL, Kho AN, Pacheco JA, Rasmussen LV, Crosslin DR, Crane PK, Pathak J, Bielinski SJ, Pendergrass SA, Xu H, Hindorff LA, Li R, Manolio TA, Chute CG, Chisholm RL, Larson EB, Jarvik GP, Brilliant MH, McCarty CA, Kullo IJ, Haines JL, Crawford DC, Masys DR, Roden DM
  (2013) Nat Biotechnol 31: 1102-10
• Single-cell phenotyping within transparent intact tissue through whole-body clearing.
  Yang B, Treweek JB, Kulkarni RP, Deverman BE, Chen CK, Lubeck E, Shah S, Cai L, Gradinaru V
  (2014) Cell 158: 945-958
• AP-3 directs the intracellular trafficking of HIV-1 Gag and plays a key role in particle assembly.
  Dong X, Li H, Derdowski A, Ding L, Burnett A, Chen X, Peters TR, Dermody TS, Woodruff E, Wang JJ, Spearman P
  (2005) Cell 120: 663-74
• Cross-Reactive and Potent Neutralizing Antibody Responses in Human Survivors of Natural Ebolavirus Infection.
  Flyak AI, Shen X, Murin CD, Turner HL, David JA, Fusco ML, Lampley R, Kose N, Ilinykh PA, Kuzmina N, Branchizio A, King H, Brown L, Bryan C, Davidson E, Doranz BJ, Slaughter JC, Sapparapu G, Klages C, Ksiazek TG, Saphire EO, Ward AB, Bukreyev A, Crowe JE
  (2016) Cell 164: 392-405
• Microarrays in brain research: the good, the bad and the ugly.
  Mirnics K
  (2001) Nat Rev Neurosci 2: 444-7
• Placement and orientation of individual DNA shapes on lithographically patterned surfaces.
  Kershner RJ, Bozano LD, Micheel CM, Hung AM, Fornof AR, Cha JN, Rettner CT, Bersani M, Frommer J, Rothemund PW, Wallraff GM
  (2009) Nat Nanotechnol 4: 557-61
• Electron microscopy of specimens in liquid.
  de Jonge N, Ross FM
  (2011) Nat Nanotechnol 6: 695-704
• The amyloid precursor protein has a flexible transmembrane domain and binds cholesterol.
  Barrett PJ, Song Y, Van Horn WD, Hustedt EJ, Schafer JM, Hadziselimovic A, Beel AJ, Sanders CR
  (2012) Science 336: 1168-71
• A phenylalanine clamp catalyzes protein translocation through the anthrax toxin pore.
  Krantz BA, Melnyk RA, Zhang S, Juris SJ, Lacy DB, Wu Z, Finkelstein A, Collier RJ
  (2005) Science 309: 777-81
• Phenotype risk scores identify patients with unrecognized Mendelian disease patterns.
  Bastarache L, Hughey JJ, Hebbring S, Marlo J, Zhao W, Ho WT, Van Driest SL, McGregor TL, Mosley JD, Wells QS, Temple M, Ramirez AH, Carroll R, Osterman T, Edwards T, Ruderfer D, Velez Edwards DR, Hamid R, Cogan J, Glazer A, Wei WQ, Feng Q, Brilliant M, Zhao ZJ, Cox NJ, Roden DM, Denny JC
  (2018) Science 359: 1233-1239
• Response to Comments on "The [4Fe4S] cluster of human DNA primase functions as a redox switch using DNA charge transport".
  O'Brien E, Holt ME, Thompson MK, Salay LE, Ehlinger AC, Chazin WJ, Barton JK
  (2017) Science 357:
• Virulence factors enhance Citrobacter rodentium expansion through aerobic respiration.
  Lopez CA, Miller BM, Rivera-Chávez F, Velazquez EM, Byndloss MX, Chávez-Arroyo A, Lokken KL, Tsolis RM, Winter SE, Bäumler AJ
  (2016) Science 353: 1249-53
• Long QT Syndrome and Potentially Pathogenic Genetic Variants--In Reply.
  Van Driest SL, Wells QS, Roden DM
  (2016) JAMA 315: 2467-8
• Association of Arrhythmia-Related Genetic Variants With Phenotypes Documented in Electronic Medical Records.
  Van Driest SL, Wells QS, Stallings S, Bush WS, Gordon A, Nickerson DA, Kim JH, Crosslin DR, Jarvik GP, Carrell DS, Ralston JD, Larson EB, Bielinski SJ, Olson JE, Ye Z, Kullo IJ, Abul-Husn NS, Scott SA, Bottinger E, Almoguera B, Connolly J, Chiavacci R, Hakonarson H, Rasmussen-Torvik LJ, Pan V, Persell SD, Smith M, Chisholm RL, Kitchner TE, He MM, Brilliant MH, Wallace JR, Doheny KF, Shoemaker MB, Li R, Manolio TA, Callis TE, Macaya D, Williams MS, Carey D, Kapplinger JD, Ackerman MJ, Ritchie MD, Denny JC, Roden DM
  (2016) JAMA 315: 47-57
• Automated identification of postoperative complications within an electronic medical record using natural language processing.
  Murff HJ, FitzHenry F, Matheny ME, Gentry N, Kotter KL, Crimin K, Dittus RS, Rosen AK, Elkin PL, Brown SH, Speroff T
  (2011) JAMA 306: 848-55
• Automated symptom alerts reduce postoperative symptom severity after cancer surgery: a randomized controlled clinical trial.
  Cleeland CS, Wang XS, Shi Q, Mendoza TR, Wright SL, Berry MD, Malveaux D, Shah PK, Gning I, Hofstetter WL, Putnam JB, Vaporciyan AA
  (2011) J Clin Oncol 29: 994-1000
• Computational approaches to the development of perceptual expertise.
  Palmeri TJ, Wong AC, Gauthier I
  (2004) Trends Cogn Sci 8: 378-86
• Loss of insulin signaling in hepatocytes leads to severe insulin resistance and progressive hepatic dysfunction.
  Michael MD, Kulkarni RN, Postic C, Previs SF, Shulman GI, Magnuson MA, Kahn CR
  (2000) Mol Cell 6: 87-97
• LPA Variants Are Associated With Residual Cardiovascular Risk in Patients Receiving Statins.
  Wei WQ, Li X, Feng Q, Kubo M, Kullo IJ, Peissig PL, Karlson EW, Jarvik GP, Lee MTM, Shang N, Larson EA, Edwards T, Shaffer CM, Mosley JD, Maeda S, Horikoshi M, Ritchie M, Williams MS, Larson EB, Crosslin DR, Bland ST, Pacheco JA, Rasmussen-Torvik LJ, Cronkite D, Hripcsak G, Cox NJ, Wilke RA, Stein CM, Rotter JI, Momozawa Y, Roden DM, Krauss RM, Denny JC
  (2018) Circulation 138: 1839-1849
• Hypogonadism as a Reversible Cause of Torsades de Pointes in Men.
  Salem JE, Waintraub X, Courtillot C, Shaffer CM, Gandjbakhch E, Maupain C, Moslehi JJ, Badilini F, Haroche J, Gougis P, Fressart V, Glazer AM, Hidden-Lucet F, Touraine P, Lebrun-Vignes B, Roden DM, Bachelot A, Funck-Brentano C
  (2018) Circulation 138: 110-113
• Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science.
  Denny JC, Ritchie MD, Crawford DC, Schildcrout JS, Ramirez AH, Pulley JM, Basford MA, Masys DR, Haines JL, Roden DM
  (2010) Circulation 122: 2016-21
• Electron spin resonance characterization of vascular xanthine and NAD(P)H oxidase activity in patients with coronary artery disease: relation to endothelium-dependent vasodilation.
  Spiekermann S, Landmesser U, Dikalov S, Bredt M, Gamez G, Tatge H, Reepschläger N, Hornig B, Drexler H, Harrison DG
  (2003) Circulation 107: 1383-9
• Endothelium-dependent vascular relaxation is abnormal in the coronary microcirculation of atherosclerotic primates.
  Sellke FW, Armstrong ML, Harrison DG
  (1990) Circulation 81: 1586-93
• Structures of the multicomponent Rieske non-heme iron toluene 2,3-dioxygenase enzyme system.
  Friemann R, Lee K, Brown EN, Gibson DT, Eklund H, Ramaswamy S
  (2009) Acta Crystallogr D Biol Crystallogr 65: 24-33
• Accelerating Biomarker Discovery Through Electronic Health Records, Automated Biobanking, and Proteomics.
  Wells QS, Gupta DK, Smith JG, Collins SP, Storrow AB, Ferguson J, Smith ML, Pulley JM, Collier S, Wang X, Roden DM, Gerszten RE, Wang TJ
  (2019) J Am Coll Cardiol 73: 2195-2205
• Differences in lymphocyte electron transport gene expression levels between subjects with bipolar disorder and normal controls in response to glucose deprivation stress.
  Naydenov AV, MacDonald ML, Ongur D, Konradi C
  (2007) Arch Gen Psychiatry 64: 555-64
• Molecular aspects of sickle cell disease.
  Waterman MR, Cottam GL
  (1976) Angew Chem Int Ed Engl 15: 749-57
• Transforming growth factor beta 1 (TGF-beta 1) induced neutrophil recruitment to synovial tissues: implications for TGF-beta-driven synovial inflammation and hyperplasia.
  Fava RA, Olsen NJ, Postlethwaite AE, Broadley KN, Davidson JM, Nanney LB, Lucas C, Townes AS
  (1991) J Exp Med 173: 1121-32
• Increased susceptibility to colitis and colorectal tumors in mice lacking core 3-derived O-glycans.
  An G, Wei B, Xia B, McDaniel JM, Ju T, Cummings RD, Braun J, Xia L
  (2007) J Exp Med 204: 1417-29
• Visualizing gold nanoparticle uptake in live cells with liquid scanning transmission electron microscopy.
  Peckys DB, de Jonge N
  (2011) Nano Lett 11: 1733-8
• Two-dimensional nanoparticle arrays show the organizational power of robust DNA motifs.
  Zheng J, Constantinou PE, Micheel C, Alivisatos AP, Kiehl RA, Seeman NC
  (2006) Nano Lett 6: 1502-4
• Direct imprinting of porous substrates: a rapid and low-cost approach for patterning porous nanomaterials.
  Ryckman JD, Liscidini M, Sipe JE, Weiss SM
  (2011) Nano Lett 11: 1857-62
• Structural basis for near unity quantum yield core/shell nanostructures.
  McBride J, Treadway J, Feldman LC, Pennycook SJ, Rosenthal SJ
  (2006) Nano Lett 6: 1496-501
• Analysis of Notch function in presomitic mesoderm suggests a gamma-secretase-independent role for presenilins in somite differentiation.
  Huppert SS, Ilagan MX, De Strooper B, Kopan R
  (2005) Dev Cell 8: 677-88
• Induced Mist1 expression promotes remodeling of mouse pancreatic acinar cells.
  Direnzo D, Hess DA, Damsz B, Hallett JE, Marshall B, Goswami C, Liu Y, Deering T, Macdonald RJ, Konieczny SF
  (2012) Gastroenterology 143: 469-80