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Creative Data Solutions (CDS) is a Vanderbilt Shared Resource and has extensive experience in providing effective and robust solutions to challenges pertaining to research data using modern informatics and bioinformatics approaches.
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Publications
- Overview of the Alliance for Cellular Signaling.
Gilman AG, Simon MI, Bourne HR, Harris BA, Long R, Ross EM, Stull JT, Taussig R, Bourne HR, Arkin AP, Cobb MH, Cyster JG, Devreotes PN, Ferrell JE, Fruman D, Gold M, Weiss A, Stull JT, Berridge MJ, Cantley LC, Catterall WA, Coughlin SR, Olson EN, Smith TF, Brugge JS, Botstein D, Dixon JE, Hunter T, Lefkowitz RJ, Pawson AJ, Sternberg PW, Varmus H, Subramaniam S, Sinkovits RS, Li J, Mock D, Ning Y, Saunders B, Sternweis PC, Hilgemann D, Scheuermann RH, DeCamp D, Hsueh R, Lin KM, Ni Y, Seaman WE, Simpson PC, O'Connell TD, Roach T, Simon MI, Choi S, Eversole-Cire P, Fraser I, Mumby MC, Zhao Y, Brekken D, Shu H, Meyer T, Chandy G, Heo WD, Liou J, O'Rourke N, Verghese M, Mumby SM, Han H, Brown HA, Forrester JS, Ivanova P, Milne SB, Casey PJ, Harden TK, Arkin AP, Doyle J, Gray ML, Meyer T, Michnick S, Schmidt MA, Toner M, Tsien RY, Natarajan M, Ranganathan R, Sambrano GR, Participating investigators and scientists of the Alliance for Cellular Signaling
(2002) Nature 420: 703-6 - Mapping the proteo-genomic convergence of human diseases.
Pietzner M, Wheeler E, Carrasco-Zanini J, Cortes A, Koprulu M, Wörheide MA, Oerton E, Cook J, Stewart ID, Kerrison ND, Luan J, Raffler J, Arnold M, Arlt W, O'Rahilly S, Kastenmüller G, Gamazon ER, Hingorani AD, Scott RA, Wareham NJ, Langenberg C
(2021) Science 374: eabj1541 - NetGestalt: integrating multidimensional omics data over biological networks.
Shi Z, Wang J, Zhang B
(2013) Nat Methods 10: 597-8 - Improving blood pressure control through provider education, provider alerts, and patient education: a cluster randomized trial.
Roumie CL, Elasy TA, Greevy R, Griffin MR, Liu X, Stone WJ, Wallston KA, Dittus RS, Alvarez V, Cobb J, Speroff T
(2006) Ann Intern Med 145: 165-75 - Online with stem cells.
Labosky PA
(2003) Dev Cell 5: 827-8 - Genetic architecture of host proteins involved in SARS-CoV-2 infection.
Pietzner M, Wheeler E, Carrasco-Zanini J, Raffler J, Kerrison ND, Oerton E, Auyeung VPW, Luan J, Finan C, Casas JP, Ostroff R, Williams SA, Kastenmüller G, Ralser M, Gamazon ER, Wareham NJ, Hingorani AD, Langenberg C
(2020) Nat Commun 11: 6397 - Data publication with the structural biology data grid supports live analysis.
Meyer PA, Socias S, Key J, Ransey E, Tjon EC, Buschiazzo A, Lei M, Botka C, Withrow J, Neau D, Rajashankar K, Anderson KS, Baxter RH, Blacklow SC, Boggon TJ, Bonvin AM, Borek D, Brett TJ, Caflisch A, Chang CI, Chazin WJ, Corbett KD, Cosgrove MS, Crosson S, Dhe-Paganon S, Di Cera E, Drennan CL, Eck MJ, Eichman BF, Fan QR, Ferré-D'Amaré AR, Fromme JC, Garcia KC, Gaudet R, Gong P, Harrison SC, Heldwein EE, Jia Z, Keenan RJ, Kruse AC, Kvansakul M, McLellan JS, Modis Y, Nam Y, Otwinowski Z, Pai EF, Pereira PJ, Petosa C, Raman CS, Rapoport TA, Roll-Mecak A, Rosen MK, Rudenko G, Schlessinger J, Schwartz TU, Shamoo Y, Sondermann H, Tao YJ, Tolia NH, Tsodikov OV, Westover KD, Wu H, Foster I, Fraser JS, Maia FR, Gonen T, Kirchhausen T, Diederichs K, Crosas M, Sliz P
(2016) Nat Commun 7: 10882 - High-quality draft assemblies of mammalian genomes from massively parallel sequence data.
Gnerre S, Maccallum I, Przybylski D, Ribeiro FJ, Burton JN, Walker BJ, Sharpe T, Hall G, Shea TP, Sykes S, Berlin AM, Aird D, Costello M, Daza R, Williams L, Nicol R, Gnirke A, Nusbaum C, Lander ES, Jaffe DB
(2011) Proc Natl Acad Sci U S A 108: 1513-8 - The Online Bioinformatics Resources Collection at the University of Pittsburgh Health Sciences Library System--a one-stop gateway to online bioinformatics databases and software tools.
Chen YB, Chattopadhyay A, Bergen P, Gadd C, Tannery N
(2007) Nucleic Acids Res 35: D780-5 - WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013.
Wang J, Duncan D, Shi Z, Zhang B
(2013) Nucleic Acids Res 41: W77-83 - MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea.
Martin SL, Blackmon BP, Rajagopalan R, Houfek TD, Sceeles RG, Denn SO, Mitchell TK, Brown DE, Wing RA, Dean RA
(2002) Nucleic Acids Res 30: 121-4 - Analysis of genetic variants in never-smokers with lung cancer facilitated by an Internet-based blood collection protocol: a preliminary report.
Girard N, Lou E, Azzoli CG, Reddy R, Robson M, Harlan M, Orlow I, Yatabe Y, Nafa K, Ladanyi M, Viale A, Kris MG, Riely G, Miller V, Klein RJ, Matsuo K, Pao W
(2010) Clin Cancer Res 16: 755-63 - Internet psycho-education programs improve outcomes in youth with type 1 diabetes.
Grey M, Whittemore R, Jeon S, Murphy K, Faulkner MS, Delamater A, TeenCope Study Group
(2013) Diabetes Care 36: 2475-82 - An internet-based program to improve self-management in adolescents with type 1 diabetes.
Mulvaney SA, Rothman RL, Wallston KA, Lybarger C, Dietrich MS
(2010) Diabetes Care 33: 602-4 - Distributed human intelligence for colonic polyp classification in computer-aided detection for CT colonography.
Nguyen TB, Wang S, Anugu V, Rose N, McKenna M, Petrick N, Burns JE, Summers RM
(2012) Radiology 262: 824-33 - Foibles, follies, and fusion: web-based collaboration for medical image labeling.
Landman BA, Asman AJ, Scoggins AG, Bogovic JA, Stein JA, Prince JL
(2012) Neuroimage 59: 530-9 - The GUDMAP database--an online resource for genitourinary research.
Harding SD, Armit C, Armstrong J, Brennan J, Cheng Y, Haggarty B, Houghton D, Lloyd-MacGilp S, Pi X, Roochun Y, Sharghi M, Tindal C, McMahon AP, Gottesman B, Little MH, Georgas K, Aronow BJ, Potter SS, Brunskill EW, Southard-Smith EM, Mendelsohn C, Baldock RA, Davies JA, Davidson D
(2011) Development 138: 2845-53 - A web-based application for initial screening of living kidney donors: development, implementation and evaluation.
Moore DR, Feurer ID, Zavala EY, Shaffer D, Karp S, Hoy H, Moore DE
(2013) Am J Transplant 13: 450-7 - Rare familial 16q21 microdeletions under a linkage peak implicate cadherin 8 (CDH8) in susceptibility to autism and learning disability.
Pagnamenta AT, Khan H, Walker S, Gerrelli D, Wing K, Bonaglia MC, Giorda R, Berney T, Mani E, Molteni M, Pinto D, Le Couteur A, Hallmayer J, Sutcliffe JS, Szatmari P, Paterson AD, Scherer SW, Vieland VJ, Monaco AP
(2011) J Med Genet 48: 48-54 - CellAnimation: an open source MATLAB framework for microscopy assays.
Georgescu W, Wikswo JP, Quaranta V
(2012) Bioinformatics 28: 138-9 - Evaluating the Merits of CKD Patient Educational Materials: Readability Is Necessary But Not Sufficient.
Tuot DS, Cavanaugh KL
(2015) Am J Kidney Dis 65: 814-6 - NGS catalog: A database of next generation sequencing studies in humans.
Xia J, Wang Q, Jia P, Wang B, Pao W, Zhao Z
(2012) Hum Mutat 33: E2341-55 - Hopkins Teen Central: Assessment of an internet-based support system for children with cystic fibrosis.
Johnson KB, Ravert RD, Everton A
(2001) Pediatrics 107: E24 - Nephrogenic systemic fibrosis: a survey of nephrologists' perceptions and practices.
Abdel-Kader K, Patel PR, Kallen AJ, Sinkowitz-Cochran RL, Bolton WK, Unruh ML
(2010) Clin J Am Soc Nephrol 5: 964-71 - Disparities in Electronic Health Record Patient Portal Use in Nephrology Clinics.
Jhamb M, Cavanaugh KL, Bian A, Chen G, Ikizler TA, Unruh ML, Abdel-Kader K
(2015) Clin J Am Soc Nephrol 10: 2013-22 - Drugs and Brugada syndrome patients: review of the literature, recommendations, and an up-to-date website (www.brugadadrugs.org).
Postema PG, Wolpert C, Amin AS, Probst V, Borggrefe M, Roden DM, Priori SG, Tan HL, Hiraoka M, Brugada J, Wilde AA
(2009) Heart Rhythm 6: 1335-41 - Courting change.
Siegel V
(2009) Dis Model Mech 2: 97-9 - Drinking from the firehose of scientific publishing.
Patil C, Siegel V
(2009) Dis Model Mech 2: 100-2 - This revolution will be digitized: online tools for radical collaboration.
Patil C, Siegel V
(2009) Dis Model Mech 2: 201-5 - An Internet-delivered video intervention for skin self-examination by patients with melanoma.
Loescher LJ, Hibler E, Hiscox H, Quale L, Harris R
(2010) Arch Dermatol 146: 922-3 - Research resource: dkCOIN, the National Institute of Diabetes, Digestive and Kidney Diseases (NIDDK) consortium interconnectivity network: a pilot program to aggregate research resources generated by multiple research consortia.
McKenna NJ, Howard CL, Aufiero M, Easton-Marks J, Steffen DL, Becnel LB, Magnuson MA, McIndoe RA, Cartailler JP
(2012) Mol Endocrinol 26: 1675-81 - Network.assisted analysis to prioritize GWAS results: principles, methods and perspectives.
Jia P, Zhao Z
(2014) Hum Genet 133: 125-38 - Is cardiac catheterization necessary before initial management of patients with stable ischemic heart disease? Results from a Web-based survey of cardiologists.
Maron DJ, Stone GW, Berman DS, Mancini GB, Scott TA, Byrne DW, Harrell FE, Shaw LJ, Hachamovitch R, Boden WE, Weintraub WS, Spertus JA
(2011) Am Heart J 162: 1034-1043.e13 - GLAD4U: deriving and prioritizing gene lists from PubMed literature.
Jourquin J, Duncan D, Shi Z, Zhang B
(2012) BMC Genomics 13 Suppl 8: S20 - Identifying the status of genetic lesions in cancer clinical trial documents using machine learning.
Wu Y, Levy MA, Micheel CM, Yeh P, Tang B, Cantrell MJ, Cooreman SM, Xu H
(2012) BMC Genomics 13 Suppl 8: S21 - NovelFam3000--uncharacterized human protein domains conserved across model organisms.
Kemmer D, Podowski RM, Arenillas D, Lim J, Hodges E, Roth P, Sonnhammer EL, Höög C, Wasserman WW
(2006) BMC Genomics 7: 48 - Patient entry of information: evaluation of user interfaces.
Kim MI, Johnson KB
(2004) J Med Internet Res 6: e13 - A Scalable Framework to Detect Personal Health Mentions on Twitter.
Yin Z, Fabbri D, Rosenbloom ST, Malin B
(2015) J Med Internet Res 17: e138 - Type 1 diabetes eHealth psychoeducation: youth recruitment, participation, and satisfaction.
Whittemore R, Jaser SS, Faulkner MS, Murphy K, Delamater A, Grey M, TEENCOPE Research Group
(2013) J Med Internet Res 15: e15 - Understanding patient portal use: implications for medication management.
Osborn CY, Mayberry LS, Wallston KA, Johnson KB, Elasy TA
(2013) J Med Internet Res 15: e133
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